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Insights · Allocations

Where allocations go wrong

The narrative decides whether a claim is eligible. The allocation decides what it is worth, and whether it survives a review. Five errors account for most of the money lost, and none of them look like errors at the time.

12 June 2026 · 9 minute read

55%Proxy overhead rate
80%Arm's length contractor
$373,000Specified employee cap
180 daysTo pay accrued salary

The narrative decides whether a claim is eligible. The allocation decides what it is worth, and whether it survives a review. In practice the second half is where most of the money is quietly lost, because an allocation error rarely looks like an error. It looks like a reasonable number that nobody can reconstruct eighteen months later.

These are the five patterns that come up most often, what each one costs, and the fix.

The numbers that govern an allocation2026 figures
Proxy overhead
55% of the salary base
Arm's length contractor
80% of the eligible amount
Specified employee cap
$373,000  5 × YMPE
Same employee, proxy base
$186,500  2.5 × YMPE
All or substantially all
90% of an employee's time
Unpaid salary deadline
180 days after year end

YMPE for 2026 is $74,600, so the two specified-employee limits move every year. For 2025 they were $356,500 and $178,250.

1. The percentage that came from memory

Someone is asked in June how much of the previous year a developer spent on the eligible project. The answer is sixty percent. It is a sincere answer, and it may even be close. But it was produced by recollection, and a reviewer can tell: there is one number for a twelve-month period, it is a round number, and the same round numbers appear across several employees.

What this costs is not usually the whole claim. It is the credibility of every other number in it. Once a reviewer decides the labour allocation was estimated after the fact, the materials and contractor lines get the same scrutiny, and the burden shifts to you to prove each one.

What a reviewer asks
“How did you arrive at 60%?” The only good answers are a timesheet, a project management system, a code repository, a lab notebook, or a documented allocation method applied consistently. “It is roughly what he was working on” is not one of them.

The fix. Any defensible allocation method has three properties: it is written down before the year ends, it is applied the same way to everyone, and it produces numbers that are not all round. Fifteen minutes a week per technical employee, recorded against a project code, is enough. It does not need to be a formal timekeeping system.

2. Directly engaged, confused with directly attributable

This is the most common technical error, and it goes in both directions.

Under the proxy method, only salary for time directly engaged in SR&ED goes into the salary base. That means hands-on work: experimentation, analysis, design, testing, and the support work commensurate with the needs of the SR&ED. It does not mean general administration, and it does not mean the overhead the proxy is already paying you for.

Under the traditional method, the wider category of directly attributable applies, which can reach administrative and support staff whose work would not exist without the SR&ED, provided it is both directly related and incremental.

Claims go wrong when a proxy claimant loads administrative time into the salary base, or when a traditional claimant leaves genuinely attributable support costs out because they assumed the proxy rules applied. The first inflates the claim and invites adjustment. The second understates it, and nobody ever tells you about the money you did not ask for.

Goes in the proxy salary base

  • Running the experiments and trials
  • Design, coding, testing, and analysis of results
  • Recording and interpreting the data
  • Technical supervision of the work itself
  • Support work directly commensurate with the needs of the SR&ED

Does not

  • General bookkeeping, HR, and clerical work
  • Time spent preparing the SR&ED claim
  • Sales, marketing, and customer support
  • Routine production once the uncertainty is resolved
  • Bonuses and profit-based remuneration for specified employees

3. The specified employee, treated like everyone else

A specified employee is, broadly, an employee who does not deal at arm's length with the company or who owns 10% or more of any class of shares. In an owner-operated company, that is usually the person doing the most technical work, which is exactly why this matters.

Two separate limits apply, and they are often confused with each other:

Applying only the first limit and running the full salary through the proxy base overstates the overhead. Applying only the second and capping the expenditure at $186,500 understates the claim. Both happen, and the second happens more often than you would expect.

Frequently missed
Bonuses and remuneration based on profits are excluded entirely for a specified employee. Not capped, not prorated: excluded. So is a taxable benefit, an unpaid amount carried from a prior year, and any bonus, when calculating the proxy salary base. A company that pays its technical founder a modest salary and a large year-end bonus has, without meaning to, moved most of that person's compensation outside the claim.

The fix. Where the technical work is genuinely being performed by an owner, the compensation structure is a planning decision made before the year ends, not an allocation decision made after it. Salary is claimable within the caps. A profit-based bonus is not.

4. The contractor line that was never tested

An arm's length contract payment for SR&ED performed on your behalf enters the qualified expenditure pool at 80% of the eligible amount. Three things go wrong here.

The 80% is applied to the wrong base. It applies to the portion of the contract that is genuinely SR&ED performed on your behalf, not to the invoice total. A contract that also covers routine production, tooling, or commercial delivery has to be split, and the split has to be supportable.

The relationship was not tested. Non-arm's length contracts follow different rules entirely. A contractor who is also a shareholder, a related company, or a person connected through common control is not automatically arm's length because an invoice was issued.

The work was not on your behalf. If the contractor retained the intellectual property, bore the risk, and sold you a result rather than performing work you directed, it may be a purchase, not a contract for SR&ED performed on your behalf. The contract wording matters, and it is usually written by someone who has never read the SR&ED policy.

SituationCommon assumptionActual treatment
Arm's length contractor, SR&ED workClaim the invoice80% of the eligible portion, in the qualified expenditure pool
Non-arm's length contractorSame as arm's lengthDifferent rules; generally traced to the performer's own costs
Contractor keeps the IP and sells a resultContract expenditureMay not be SR&ED performed on your behalf at all
Contractor salary under the proxy methodAdds to the proxy baseContract payments do not enter the salary base

5. Materials that were consumed, transformed, or sold

Materials consumed in SR&ED are claimable. Materials transformed into something that is then sold are treated differently, and the value recovered generally reduces the claim. A pilot batch that fails and is discarded is not the same as a pilot batch that meets specification and ships to a customer, even though the experimental work behind both was identical.

This is the single most common source of adjustment in food, natural health product, chemical, and materials manufacturing, because in those sectors the experimental run and the saleable run are often the same run. It is also where claims are most often understated, because companies write off the whole category rather than separating the consumed portion from the transformed portion.

The fix. Batch records already exist in these industries for regulatory reasons. Tag the experimental batches at the time they run, record what was discarded and what was released, and the allocation writes itself.

The one that is not an allocation error at all

Employee remuneration that is not paid within 180 days of the end of the tax year in which it was incurred is treated as not having been incurred. An accrued bonus to a technical employee, still unpaid at day 181, does not simply move to a later year within the claim. It falls out.

This has nothing to do with how the time was allocated. It is a payment deadline, and it is missed every year by companies that accrue compensation at year end and settle it when cash allows.

What a defensible allocation actually looks like

None of this requires a timekeeping system, new software, or more staff. It requires a decision, made once, about how time and cost will be recorded, and then fifteen minutes a week. The claim that results is not larger because it was inflated. It is larger because nothing eligible was left out, and it holds because every number in it can be traced back to something that was written down at the time.

Have the allocation checked before you file

A claim is reviewed on its numbers as often as on its science. If your allocation method has never been written down, or the same percentages have been used for three years, it is worth a look before the return goes in.

Book a meeting Check your eligibility
Briefing
Writing the technical narrative
Briefing
What makes a claim get reviewed
Resource
The SR&ED time-tracking sheet
Briefing
What actually qualifies

General information current at the date of writing, not advice on a specific claim. Program rules, forms, and administrative practice change; we confirm the current position for every file.

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